Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs4688989 chr4:6290594 T/C 3.43E-7 119 25.83 38.33 50.13 KM Plot
THYM rs4688991 chr4:6302220 C/G 3.54E-6 118 25.83 38.83 49.73 KM Plot
THYM rs4689391 chr4:6280449 G/A 5.3E-6 115 25.83 40.78 50.3 KM Plot
THYM rs4689394 chr4:6291003 C/G 3.43E-7 119 50.13 38.33 25.83 KM Plot
THYM rs4689398 chr4:6302199 C/T 3.85E-6 117 25.83 38.83 50.07 KM Plot
THYM rs4700749 chr5:180080326 A/G 0.000232 118 50.07 42.82 34.87 KM Plot
THYM rs4700975 chr5:180117789 G/A 0 119 45.87 32.7 4.13 KM Plot
THYM rs4721358 chr7:844372 G/A 0.000116 114 46.6 22.5 25.47 KM Plot
THYM rs4724816 chr7:6583445 G/C 0 117 4.13 50.28 35.4 KM Plot
THYM rs4727187 chr7:76132473 C/A 2.94E-5 117 39.5 46.23 28.43 KM Plot
THYM rs4727191 chr7:76139384 C/T 0.000249 119 40.67 45.87 28.43 KM Plot
THYM rs4728773 chr7:76131061 C/T 0.000116 114 39.5 45.87 25.83 KM Plot
THYM rs4728783 chr7:76135677 C/T 0.000249 119 39.5 46.23 28.43 KM Plot
THYM rs4728784 chr7:76135821 C/T 0.000249 119 39.5 46.23 28.43 KM Plot
THYM rs4728785 chr7:76135921 G/A 0.000249 119 39.5 46.23 28.43 KM Plot